STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpcn1Two pore segment channel 1. (831 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.997
IFT122
Intraflagellar transport 122.
   
 0.824
wdr19
WD repeat domain 19.
    
 0.811
ift140
Intraflagellar transport 140.
    
 0.810
LOC114439792
Voltage-dependent calcium channel gamma-1 subunit-like.
   
 0.802
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 0.802
LOC114432141
Sodium channel subunit beta-1-like.
    
 0.784
LOC114448762
Sodium channel subunit beta-1-like.
    
 0.784
LOC114448258
Sodium channel subunit beta-1-like.
    
 0.784
calm2
Calmodulin 2.
    
 0.753
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.