STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114433127Zinc finger protein 395-like. (500 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
  0.839
ENSPRNP00000010757
BRCA1 associated RING domain 1.
    
 0.838
lyrm4
LYR motif containing 4.
    
 0.829
ENSPRNP00000001312
Recombination activating gene 2.
   
 0.827
babam1
BRISC and BRCA1 A complex member 1.
    
 0.741
rpl21
Ribosomal protein L21.
   
   0.740
pla2g4a
Phospholipase A2 group IVA.
     
 0.729
rps27a
Ribosomal protein S27a.
    
  0.715
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.715
rpl11
Ribosomal protein L11.
    
 0.714
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.