STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd34bAnkyrin repeat domain 34B. (566 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.771
rps3
Ribosomal protein S3.
    
 0.683
mars1
methionyl-tRNA synthetase 1.
   
 0.665
traf7
TNF receptor associated factor 7.
    
  0.659
birc6
Baculoviral IAP repeat containing 6.
   
 0.657
ift81
Intraflagellar transport 81.
    
 0.630
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.618
skp1
S-phase kinase associated protein 1.
   
  0.612
LOC114442757
F-box/WD repeat-containing protein 11.
    
  0.611
ENSPRNP00000035317
SH3 and multiple ankyrin repeat domains 1.
    
  0.606
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.