STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc23a1Solute carrier family 23 member 1. (584 aa)    
Predicted Functional Partners:
gart
annotation not available
  
  
 0.917
umps
Uridine monophosphate synthetase.
  
  
 0.861
golt1b
Golgi transport 1B.
  
  
 0.801
LOC114451371
Vesicle transport protein GOT1B.
  
  
 0.801
dhodh
Dihydroorotate dehydrogenase (quinone).
  
  
 0.700
dpyd
Dihydropyrimidine dehydrogenase.
  
  
 0.700
LOC114437386
Solute carrier family 23 member 1-like.
  
  
 
0.693
LOC114428763
Solute carrier family 23 member 1-like.
  
  
 
0.693
LOC114428499
Solute carrier family 23 member 1-like.
  
  
 
0.693
med6
Mediator complex subunit 6.
    
  0.690
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.