STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps13dVacuolar protein sorting 13 homolog D. (4332 aa)    
Predicted Functional Partners:
kiaa2013
KIAA2013 ortholog.
      
 0.538
prr16
Proline rich 16.
      
 0.522
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.499
atg2a
Autophagy related 2A.
   
  
 0.473
ATG2B
Autophagy related 2B.
   
  
0.473
KMT2A
Lysine methyltransferase 2A.
  
  
 0.465
miga2
Mitoguardin 2.
      
 0.463
park7
Parkinsonism associated deglycase.
      
 0.459
rdm1
RAD52 motif containing 1.
      
 0.424
rsu1
Ras suppressor protein 1.
      
 0.412
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.