STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD9LSterile alpha motif domain-containing protein 9-like. (1525 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.771
rps3
Ribosomal protein S3.
    
 0.683
mars1
methionyl-tRNA synthetase 1.
   
 0.665
traf7
TNF receptor associated factor 7.
    
  0.659
birc6
Baculoviral IAP repeat containing 6.
   
 0.644
skp1
S-phase kinase associated protein 1.
   
 0.640
ift81
Intraflagellar transport 81.
    
 0.630
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.618
LOC114442757
F-box/WD repeat-containing protein 11.
    
  0.611
ENSPRNP00000035317
SH3 and multiple ankyrin repeat domains 1.
    
  0.606
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.