STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114442483Peroxisome proliferator-activated receptor gamma coactivator 1-beta-like. (929 aa)    
Predicted Functional Partners:
med15
Mediator complex subunit 15.
     
 0.928
med19
Mediator complex subunit 19.
     
 0.924
med27
Mediator complex subunit 27.
     
 0.919
med1
Mediator complex subunit 1.
     
 0.919
NCBP1
Nuclear cap binding protein subunit 1.
    
   0.893
LOC114439659
Sterol regulatory element-binding protein 2-like.
    
 0.887
srebf1
Sterol regulatory element binding transcription factor 1.
    
 0.887
LOC114446183
Steroid hormone receptor ERR1-like.
    
 0.879
med23
Mediator complex subunit 23.
     
 0.868
LOC114428973
N-myc proto-oncogene protein-like.
    
 0.853
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.