STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptcd2Pentatricopeptide repeat domain 2. (381 aa)    
Predicted Functional Partners:
malsu1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.738
mrpl3
Mitochondrial ribosomal protein L3.
   
   0.732
mrpl18
Mitochondrial ribosomal protein L18.
   
   0.730
mrpl11
Mitochondrial ribosomal protein L11.
    
 
 0.730
mrpl58
Mitochondrial ribosomal protein L58.
    
 
 0.730
mrpl28
Mitochondrial ribosomal protein L28.
   
   0.724
mrps30
Mitochondrial ribosomal protein S30.
   
   0.723
mrpl16
Mitochondrial ribosomal protein L16.
   
   0.717
mrpl51
Mitochondrial ribosomal protein L51.
   
   0.716
mrpl9
Mitochondrial ribosomal protein L9.
   
   0.715
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.