STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hampHepcidin antimicrobial peptide. (90 aa)    
Predicted Functional Partners:
ENSPRNP00000027313
annotation not available
  
  
0.847
ENSPRNP00000027309
annotation not available
  
  
0.809
LOC114448587
Hepcidin-like.
  
  
0.808
LOC114432440
Upstream stimulatory factor 2-like.
     
 0.577
LOC114448727
Upstream stimulatory factor 2-like.
     
 0.577
ENSPRNP00000025069
annotation not available
  
     0.480
usf1
Upstream transcription factor 1.
     
 0.455
homez
Homeobox and leucine zipper encoding.
  
     0.448
ENSPRNP00000022397
Apolipoprotein A-II.
  
     0.423
LOC114447898
Uncharacterized LOC114447898.
  
     0.415
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.