STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ercc6lERCC excision repair 6 like, spindle assembly checkpoint helicase. (1313 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.960
exo1
Exonuclease 1.
  
 0.941
dmap1
DNA methyltransferase 1 associated protein 1.
    
 0.931
ruvbl2
RuvB like AAA ATPase 2.
   
 0.929
actl6a
Actin like 6A.
   
 0.929
trrap
Transformation/transcription domain associated protein.
   
 0.921
pcna
Proliferating cell nuclear antigen.
  
 0.918
LOC114438137
Opioid growth factor receptor-like protein 1.
    
 0.918
actr5
Actin related protein 5.
    
 0.916
rad18
RAD18 E3 ubiquitin protein ligase.
   
 0.909
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.