STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000004846annotation not available (196 aa)    
Predicted Functional Partners:
usp8
Ubiquitin specific peptidase 8.
    
 0.774
USP50
Ubiquitin specific peptidase 50.
    
 0.746
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.732
otub1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
    
 0.732
cskmt
Citrate synthase lysine methyltransferase.
    
 0.665
rps27a
Ribosomal protein S27a.
    
  0.656
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.656
ENSPRNP00000001287
Ubiquitin specific peptidase 21.
    
 0.651
LOC114446120
Ubiquitin carboxyl-terminal hydrolase 2-like.
    
 0.651
LOC114444482
Ubiquitin carboxyl-terminal hydrolase 2-like.
    
 0.651
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.