STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114446459Tetratricopeptide repeat protein 1-like. (373 aa)    
Predicted Functional Partners:
mrps10
Mitochondrial ribosomal protein S10.
   
 
 0.915
RPS20
Ribosomal protein S20.
   
 
 0.814
ppp1r7
Protein phosphatase 1 regulatory subunit 7.
   
    0.772
rnf41
Ring finger protein 41.
    
   0.707
LOC114442253
Heat shock 70 kDa protein 4-like.
    
 
 0.586
LOC114445831
Heat shock 70 kDa protein 4-like.
    
 
 0.586
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
   
    0.567
tomm70
Translocase of outer mitochondrial membrane 70.
      
0.533
ENSPRNP00000018593
annotation not available
      
 0.491
LOC114436395
Vesicle-associated membrane protein-associated protein B-like.
    
 
 0.485
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.