STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114448729NLR family CARD domain-containing protein 3-like. (947 aa)    
Predicted Functional Partners:
ripk2
Receptor interacting serine/threonine kinase 2.
   
 0.633
rfx5
Regulatory factor X5.
    
  0.597
LOC114449080
Apoptosis-associated speck-like protein containing a CARD.
   
  0.584
LOC114448260
Apoptosis-associated speck-like protein containing a CARD.
   
  0.584
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
  0.570
brcc3
BRCA1/BRCA2-containing complex subunit 3.
    
  0.559
rfxank
Regulatory factor X associated ankyrin containing protein.
    
 0.556
nek7
NIMA related kinase 7.
    
  0.556
nek6
NIMA related kinase 6.
    
  0.556
ripk4
Receptor interacting serine/threonine kinase 4.
    
  0.552
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.