STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc17Zinc finger CCHC-type containing 17. (243 aa)    
Predicted Functional Partners:
bysl
Bystin like.
   
 0.944
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.941
utp3
UTP3 small subunit processome component.
   
 0.935
LOC114426072
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 0.933
cdc5l
Cell division cycle 5 like.
   
 0.930
ddx49
DEAD-box helicase 49.
  
 0.925
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 0.925
utp25
UTP25 small subunit processor component.
   
 0.924
nol6
Nucleolar protein 6.
   
 0.922
slu7
SLU7 homolog, splicing factor.
   
 0.919
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.