STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdcd6ipProgrammed cell death 6 interacting protein. (887 aa)    
Predicted Functional Partners:
LOC114453269
Charged multivesicular body protein 4c-like.
    
 0.988
LOC114436295
Charged multivesicular body protein 4b.
    
 0.987
LOC114439200
Charged multivesicular body protein 4b-like.
    
 0.987
tm9sf1
Transmembrane 9 superfamily member 1.
   
 0.956
LOC114437658
Tumor susceptibility gene 101 protein-like.
   
 0.916
tsg101
Tumor susceptibility 101.
   
 0.916
LOC114438303
Syntenin-1-like.
    
 0.891
ptpn23
Protein tyrosine phosphatase non-receptor type 23.
    
0.882
mvb12a
Multivesicular body subunit 12A.
     
 0.871
MVB12B
Multivesicular body subunit 12B-like.
     
 0.868
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.