STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114432358Ras-related protein Rab-9A-like. (201 aa)    
Predicted Functional Partners:
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.921
vps16
VPS16 core subunit of CORVET and HOPS complexes.
    
 
 0.909
vps41
VPS41 subunit of HOPS complex.
    
 
 0.908
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
 
 0.907
vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 
 0.907
LOC114436367
Rab GDP dissociation inhibitor beta-like.
    
 0.894
LOC114438251
Rab GDP dissociation inhibitor alpha.
    
 0.894
LOC114431925
Rab GDP dissociation inhibitor beta-like.
    
 0.894
GCC2
GRIP and coiled-coil domain containing 2.
     
 0.860
LOC114436780
Vacuolar fusion protein MON1 homolog B-like.
    
 0.854
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.