STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1144316161-phosphatidylinositol phosphodiesterase-like. (341 aa)    
Predicted Functional Partners:
LOC114448222
Unconventional myosin-Ie-like.
   
 
  0.695
ENSPRNP00000031312
annotation not available
   
 
  0.695
LOC114434678
Unconventional myosin-If-like.
   
 
  0.574
myo1e
Myosin IE.
   
 
  0.574
LOC114446892
Ninein-like protein.
   
 
  0.498
nin
Ninein.
   
 
  0.498
asmtl
Acetylserotonin O-methyltransferase like.
      
 0.489
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.