STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfkb1Nuclear factor kappa B subunit 1. (930 aa)    
Predicted Functional Partners:
nfkbia
NFKB inhibitor alpha.
   
0.988
LOC114429119
NF-kappa-B inhibitor alpha-like.
   
0.988
map3k8
Mitogen-activated protein kinase kinase kinase 8.
   
 0.972
LOC114445348
Transcription factor RelB homolog.
   
0.968
REL
Proto-oncogene c-Rel-like.
   
0.967
rela
RELA proto-oncogene, NF-kB subunit.
   
0.967
LOC114447076
Inhibitor of nuclear factor kappa-B kinase subunit alpha-like.
   
 0.955
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.955
kpna4
Karyopherin subunit alpha 4.
    
  0.944
kpna3
Karyopherin subunit alpha 3.
    
  0.943
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.