STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114428363Glutamate receptor ionotropic, kainate 2-like. (892 aa)    
Predicted Functional Partners:
grik4
Glutamate ionotropic receptor kainate type subunit 4.
  
 
0.852
GRIK5
Glutamate receptor ionotropic, kainate 5-like.
  
 
0.851
grik5
Glutamate ionotropic receptor kainate type subunit 5.
  
 
0.850
GRIN3A
Glutamate receptor ionotropic, NMDA 3A-like.
   
0.763
scn4b
Sodium voltage-gated channel beta subunit 4.
     
 0.734
scn3b
Sodium voltage-gated channel beta subunit 3.
   
 
 0.722
scn2b
Sodium voltage-gated channel beta subunit 2.
   
 
  0.709
vwc2l
Von Willebrand factor C domain containing 2 like.
   
 
  0.693
LOC114452111
Neuropilin and tolloid-like protein 2.
   
 0.650
neto2
Neuropilin and tolloid like 2.
   
 0.650
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.