STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114436364Mitochondrial RNA pseudouridine synthase rpusd4-like. (420 aa)    
Predicted Functional Partners:
malsu1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.928
gtpbp3
GTP binding protein 3, mitochondrial.
  
 
 0.918
mrm3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.916
MRPL21
Mitochondrial ribosomal protein L21.
  
   0.894
mrpl17
Mitochondrial ribosomal protein L17.
   
   0.893
mtg1
Mitochondrial ribosome associated GTPase 1.
   
 
 0.884
gtpbp8
GTP binding protein 8 (putative).
   
 
 0.883
mrpl47
Mitochondrial ribosomal protein L47.
    
 
 0.877
mrpl3
Mitochondrial ribosomal protein L3.
  
 
 0.876
pus7
Pseudouridine synthase 7.
   
 
 0.874
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.