STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcor1REST corepressor 1. (446 aa)    
Predicted Functional Partners:
kdm1a
Lysine demethylase 1A.
   
 0.987
rest
RE1 silencing transcription factor.
    
 0.940
phf21a
PHD finger protein 21A.
   
 0.918
KDM1B
Lysine demethylase 1B.
   
 0.903
LOC114426721
Amine oxidase [flavin-containing].
    
 0.898
LOC114443431
Probable flavin-containing monoamine oxidase A.
    
 0.898
LOC114428135
Probable histone deacetylase 1-B.
    
 0.890
HDAC1
Probable histone deacetylase 1-B.
    
 0.890
HDAC2
Histone deacetylase 2.
    
 0.890
ENSPRNP00000010246
Histone deacetylase 8.
    
 0.850
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.