STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114428094Sentrin-specific protease 2-like. (554 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin like modifier 1.
   
 0.976
ipo5
Importin 5.
    
 
 0.940
nup153
Nucleoporin 153.
   
 0.918
LOC114427690
Small ubiquitin-related modifier 3.
   
 0.914
LOC114433646
Small ubiquitin-related modifier 2.
   
 0.914
LOC114426739
Small ubiquitin-related modifier 3.
   
 0.914
sumo2
Small ubiquitin like modifier 2.
   
 0.914
LOC114431985
Sentrin-specific protease 7-like.
    
0.882
SENP6
SUMO specific peptidase 6.
    
0.882
ENSPRNP00000044825
annotation not available
    
0.882
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.