acod1 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

acod1

Aconitate decarboxylase 1. (445 aa)

Predicted Functional Partners:

amt

0.900

arsb

0.898

pdpr

0.898

sardh

0.898

agxt2

0.884

gcat

0.865

LOC114452272

0.862

LOC114437269

0.859

aifm3

0.859

LOC114445403

0.859

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114437269	LOC114452272	ENSPRNP00000000748	ENSPRNP00000046466	Sulfide:quinone oxidoreductase, mitochondrial-like.	Probable low-specificity L-threonine aldolase 2.	0.658
LOC114437269	acod1	ENSPRNP00000000748	ENSPRNP00000005945	Sulfide:quinone oxidoreductase, mitochondrial-like.	Aconitate decarboxylase 1.	0.859
LOC114437269	amt	ENSPRNP00000000748	ENSPRNP00000038773	Sulfide:quinone oxidoreductase, mitochondrial-like.	Aminomethyltransferase.	0.620
LOC114437269	arsb	ENSPRNP00000000748	ENSPRNP00000017742	Sulfide:quinone oxidoreductase, mitochondrial-like.	Dimethylglycine dehydrogenase.	0.620
LOC114437269	gcat	ENSPRNP00000000748	ENSPRNP00000013028	Sulfide:quinone oxidoreductase, mitochondrial-like.	Glycine C-acetyltransferase.	0.526
LOC114437269	pdpr	ENSPRNP00000000748	ENSPRNP00000050243	Sulfide:quinone oxidoreductase, mitochondrial-like.	Pyruvate dehydrogenase phosphatase regulatory subunit.	0.620
LOC114437269	sardh	ENSPRNP00000000748	ENSPRNP00000050846	Sulfide:quinone oxidoreductase, mitochondrial-like.	Sarcosine dehydrogenase.	0.620
LOC114445403	LOC114452272	ENSPRNP00000012330	ENSPRNP00000046466	Apoptosis-inducing factor 3-like.	Probable low-specificity L-threonine aldolase 2.	0.658
LOC114445403	acod1	ENSPRNP00000012330	ENSPRNP00000005945	Apoptosis-inducing factor 3-like.	Aconitate decarboxylase 1.	0.859
LOC114445403	amt	ENSPRNP00000012330	ENSPRNP00000038773	Apoptosis-inducing factor 3-like.	Aminomethyltransferase.	0.620
LOC114445403	arsb	ENSPRNP00000012330	ENSPRNP00000017742	Apoptosis-inducing factor 3-like.	Dimethylglycine dehydrogenase.	0.620
LOC114445403	gcat	ENSPRNP00000012330	ENSPRNP00000013028	Apoptosis-inducing factor 3-like.	Glycine C-acetyltransferase.	0.526
LOC114445403	pdpr	ENSPRNP00000012330	ENSPRNP00000050243	Apoptosis-inducing factor 3-like.	Pyruvate dehydrogenase phosphatase regulatory subunit.	0.620
LOC114445403	sardh	ENSPRNP00000012330	ENSPRNP00000050846	Apoptosis-inducing factor 3-like.	Sarcosine dehydrogenase.	0.620
LOC114452272	LOC114437269	ENSPRNP00000046466	ENSPRNP00000000748	Probable low-specificity L-threonine aldolase 2.	Sulfide:quinone oxidoreductase, mitochondrial-like.	0.658
LOC114452272	LOC114445403	ENSPRNP00000046466	ENSPRNP00000012330	Probable low-specificity L-threonine aldolase 2.	Apoptosis-inducing factor 3-like.	0.658
LOC114452272	acod1	ENSPRNP00000046466	ENSPRNP00000005945	Probable low-specificity L-threonine aldolase 2.	Aconitate decarboxylase 1.	0.862
LOC114452272	agxt2	ENSPRNP00000046466	ENSPRNP00000009897	Probable low-specificity L-threonine aldolase 2.	Alanine--glyoxylate aminotransferase 2.	0.895
LOC114452272	aifm3	ENSPRNP00000046466	ENSPRNP00000004002	Probable low-specificity L-threonine aldolase 2.	Apoptosis inducing factor mitochondria associated 3.	0.658
LOC114452272	amt	ENSPRNP00000046466	ENSPRNP00000038773	Probable low-specificity L-threonine aldolase 2.	Aminomethyltransferase.	0.900