STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc1Leucine rich repeat containing 1. (525 aa)    
Predicted Functional Partners:
UBE3A
Ubiquitin-protein ligase E3A.
    
 0.889
dlg5
Discs large MAGUK scaffold protein 5.
    
 0.883
ctnnb1
Catenin beta 1.
   
 0.879
llgl2
LLGL scribble cell polarity complex component 2.
    
 0.861
LOC114434868
Ubiquitin-protein ligase E3A-like.
    
 0.831
ENSPRNP00000006976
Netrin g1a.
    
 0.776
ENSPRNP00000055352
Vav 3 guanine nucleotide exchange factor b.
    
 0.776
mras
Muscle RAS oncogene homolog.
    
 0.757
hras
HRas proto-oncogene, GTPase.
    
 0.754
LOC114439757
GTPase HRas-like.
    
 0.754
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.