STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps50VPS50 subunit of EARP/GARPII complex. (992 aa)    
Predicted Functional Partners:
vps53
VPS53 subunit of GARP complex.
    
 0.998
vps51
VPS51 subunit of GARP complex.
    
 0.998
vps52
VPS52 subunit of GARP complex.
   
 0.996
eipr1
EARP complex and GARP complex interacting protein 1.
    
 0.992
LOC114438771
Vacuolar protein sorting-associated protein 54-like.
   
 0.961
VPS54
Vacuolar protein sorting-associated protein 54-like.
   
 0.961
ccdc186
Coiled-coil domain containing 186.
      
 0.581
dym
Dymeclin.
   
  
 0.565
gak
Cyclin G associated kinase.
   
  
 0.544
ccdc138
Coiled-coil domain containing 138.
      
 0.537
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.