STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg9aAutophagy related 9A. (857 aa)    
Predicted Functional Partners:
ulk1
Unc-51 like autophagy activating kinase 1.
   
 0.953
LOC114440740
Serine/threonine-protein kinase ULK1-like.
   
 0.953
ulk2
Unc-51 like autophagy activating kinase 2.
   
 0.953
atg2a
Autophagy related 2A.
   
 0.936
ATG2B
Autophagy related 2B.
   
 0.936
atg13
Autophagy related 13.
   
 0.935
supt20h
SPT20 homolog, SAGA complex component.
    
 0.932
ulk3
Unc-51 like kinase 3.
   
 0.931
LOC114440267
WD repeat domain phosphoinositide-interacting protein 1-like.
   
 0.919
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 0.919
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.