STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114431223Adipocyte plasma membrane-associated protein-like. (457 aa)    
Predicted Functional Partners:
FDXACB1
Ferredoxin-fold anticodon binding domain containing 1.
  
  
 0.895
trnt1
tRNA nucleotidyl transferase 1.
  
 0.881
supv3l1
Suv3 like RNA helicase.
   
 0.880
exosc10
Exosome component 10.
   
 
 0.872
tsfm
Ts translation elongation factor, mitochondrial.
  
  
 0.857
mtif2
Mitochondrial translational initiation factor 2.
  
  
 0.850
eif5b
Eukaryotic translation initiation factor 5B.
  
  
 0.850
mrpl20
Mitochondrial ribosomal protein L20.
  
  
 0.839
mrpl2
Mitochondrial ribosomal protein L2.
  
  0.832
rps9
Ribosomal protein S9.
  
  
 0.825
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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