STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp40Ubiquitin specific peptidase 40. (1286 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.967
rps27a
Ribosomal protein S27a.
   
 0.959
gmps
Guanine monophosphate synthase.
   
 
 0.936
daxx
Death domain associated protein.
    
 0.926
dnmt1
DNA methyltransferase 1.
   
 
 0.911
uvssa
UV stimulated scaffold protein A.
    
 0.905
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.886
LOC114431564
Forkhead box protein O6-like.
    
  0.848
ubb
Ubiquitin B.
   
 0.838
LOC114445878
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like.
   
 0.838
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.