STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114449155Sorcin-like. (169 aa)    
Predicted Functional Partners:
cast
Calpastatin.
   
 0.874
ENSPRNP00000007820
annotation not available
    
 0.787
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.765
sec31a
SEC31 homolog A, COPII coat complex component.
    
 0.707
ankrd40
Ankyrin repeat domain 40.
    
 0.707
LOC114451491
Protein transport protein Sec31A-like.
    
 0.707
noa1
Nitric oxide associated 1.
     
 0.686
fech
Ferrochelatase.
   
    0.621
sec24a
SEC24 homolog A, COPII coat complex component.
    
 0.587
LOC114442754
Protein transport protein Sec24B-like.
    
 0.587
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.