LOC114439643 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114439643

Cytohesin-1. (432 aa)

Predicted Functional Partners:

ENSPRNP00000029885

0.912

arf6

0.912

pik3cd

0.842

LOC114449508

0.842

pik3cb

0.842

LOC114438470

0.840

pik3cg

0.840

LOC114431271

0.771

LOC114434233

0.771

arl15

0.765

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPRNP00000029885	LOC114439643	ENSPRNP00000029885	ENSPRNP00000006477	ADP-ribosylation factor 6b.	Cytohesin-1.	0.912
LOC114431271	LOC114438470	ENSPRNP00000035834	ENSPRNP00000013498	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	0.780
LOC114431271	LOC114439643	ENSPRNP00000035834	ENSPRNP00000006477	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Cytohesin-1.	0.771
LOC114431271	LOC114449508	ENSPRNP00000035834	ENSPRNP00000039867	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform.	0.832
LOC114431271	pik3cg	ENSPRNP00000035834	ENSPRNP00000026838	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma.	0.841
LOC114434233	LOC114438470	ENSPRNP00000046109	ENSPRNP00000013498	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	0.780
LOC114434233	LOC114439643	ENSPRNP00000046109	ENSPRNP00000006477	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Cytohesin-1.	0.771
LOC114434233	LOC114449508	ENSPRNP00000046109	ENSPRNP00000039867	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform.	0.832
LOC114434233	pik3cg	ENSPRNP00000046109	ENSPRNP00000026838	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma.	0.841
LOC114438470	LOC114431271	ENSPRNP00000013498	ENSPRNP00000035834	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	0.780
LOC114438470	LOC114434233	ENSPRNP00000013498	ENSPRNP00000046109	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	0.780
LOC114438470	LOC114439643	ENSPRNP00000013498	ENSPRNP00000006477	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Cytohesin-1.	0.840
LOC114438470	LOC114449508	ENSPRNP00000013498	ENSPRNP00000039867	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform.	0.871
LOC114438470	pik3cb	ENSPRNP00000013498	ENSPRNP00000041590	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta.	0.860
LOC114438470	pik3cd	ENSPRNP00000013498	ENSPRNP00000003866	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta.	0.676
LOC114438470	pik3cg	ENSPRNP00000013498	ENSPRNP00000026838	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma.	0.839
LOC114439643	ENSPRNP00000029885	ENSPRNP00000006477	ENSPRNP00000029885	Cytohesin-1.	ADP-ribosylation factor 6b.	0.912
LOC114439643	LOC114431271	ENSPRNP00000006477	ENSPRNP00000035834	Cytohesin-1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	0.771
LOC114439643	LOC114434233	ENSPRNP00000006477	ENSPRNP00000046109	Cytohesin-1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.	0.771
LOC114439643	LOC114438470	ENSPRNP00000006477	ENSPRNP00000013498	Cytohesin-1.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform-like.	0.840