STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114433014Paired amphipathic helix protein Sin3a-like. (1299 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
    
 0.996
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
    
 0.996
suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 0.984
phf12
PHD finger protein 12.
   
 0.983
LOC114426508
Inhibitor of growth protein 1-like.
   
 0.975
sap30l
SAP30 like.
    
 0.964
LOC114451951
Mortality factor 4-like protein 1.
   
 0.964
LOC114433222
Mortality factor 4-like protein 1.
   
 0.964
rest
RE1 silencing transcription factor.
    
 0.952
hdac3
Histone deacetylase 3.
   
 0.952
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.