STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddb1Damage specific DNA binding protein 1. (1138 aa)    
Predicted Functional Partners:
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 0.999
ddb2
Damage specific DNA binding protein 2.
    
 0.999
rbx1
Ring-box 1.
    
 0.999
dtl
Denticleless E3 ubiquitin protein ligase homolog.
    
 0.999
crbn
Cereblon.
    
 0.998
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
 0.997
dcaf12
DDB1 and CUL4 associated factor 12.
    
 0.996
dcaf4
DDB1 and CUL4 associated factor 4.
    
 0.996
wdtc1
WD and tetratricopeptide repeats 1.
    
 0.996
dcaf5
DDB1 and CUL4 associated factor 5.
    
 0.996
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.