STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad7SMAD family member 7. (376 aa)    
Predicted Functional Partners:
smurf1
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.955
LOC114440355
E3 ubiquitin-protein ligase SMURF2.
    
 0.955
SMURF2
E3 ubiquitin-protein ligase SMURF2-like.
    
 0.955
yap1
Yes associated protein 1.
    
 0.944
SMAD9
SMAD family member 9.
   
0.892
smad1
SMAD family member 1.
   
0.892
LOC114442472
Mothers against decapentaplegic homolog 5.
   
0.892
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 0.886
LOC114452857
TGF-beta receptor type-1-like.
   
 0.864
LOC114427134
Activin receptor type-1-like.
   
 0.848
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.