STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cracr2bCalcium release activated channel regulator 2B. (652 aa)    
Predicted Functional Partners:
dync1li2
Dynein cytoplasmic 1 light intermediate chain 2.
    
  0.852
LOC114452709
Cytoplasmic dynein 1 light intermediate chain 1-like.
    
  0.852
c9orf72
C9orf72-SMCR8 complex subunit.
    
  0.835
sqstm1
Sequestosome 1.
    
 0.807
chm
CHM Rab escort protein.
    
 0.772
LOC114452127
Guanine nucleotide exchange factor for Rab-3A-like.
    
 0.769
rab3ip
RAB3A interacting protein.
    
 0.769
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.740
exoc4
Exocyst complex component 4.
    
 0.690
exoc1
Exocyst complex component 1.
   
 0.687
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.