STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn10Ataxin 10. (533 aa)    
Predicted Functional Partners:
iqcb1
IQ motif containing B1.
    
 
 0.578
ENSPRNP00000023388
annotation not available
      
 0.527
cdpf1
Cysteine rich DPF motif domain containing 1.
      
 0.515
usp9x
Ubiquitin specific peptidase 9 X-linked.
    
 
 0.513
atxn2
Ataxin 2.
   
  
 0.509
c13h19orf54
Chromosome 13 C19orf54 homolog.
      
 0.506
LOC114435849
Rho guanine nucleotide exchange factor 40-like.
      
 0.483
ENSPRNP00000019167
annotation not available
      
 0.478
c16h8orf37
Chromosome 16 C8orf37 homolog.
      
 0.476
ttc26
Tetratricopeptide repeat domain 26.
      
 0.435
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.