STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kiaa2013KIAA2013 ortholog. (581 aa)    
Predicted Functional Partners:
LOC114449979
V-type proton ATPase subunit d 1-like.
    
   0.691
LOC114438091
V-type proton ATPase subunit S1-like.
    
   0.680
LOC114438252
V-type proton ATPase subunit S1-like.
    
   0.680
LOC114438759
V-type proton ATPase subunit S1-like.
    
   0.600
atp6ap2
ATPase H+ transporting accessory protein 2.
    
   0.560
vps13d
Vacuolar protein sorting 13 homolog D.
      
 0.538
mblac2
Metallo-beta-lactamase domain containing 2.
      
 0.531
miip
Migration and invasion inhibitory protein.
      
 0.513
otud5
OTU deubiquitinase 5.
   
  
 0.484
hectd3
HECT domain E3 ubiquitin protein ligase 3.
      
 0.483
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.