LOC114447196 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114447196

Barrier-to-autointegration factor-like protein. (100 aa)

Predicted Functional Partners:

emd

0.971

lemd3

0.847

ankle2

0.813

lmnb2

0.785

LOC114450717

0.783

LOC114438730

0.783

vrk2

0.781

vrk1

0.781

lmnb1

0.763

LOC114427771

0.758

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114427771	LOC114438730	ENSPRNP00000016236	ENSPRNP00000012383	lamin-A-like.	RNA-binding protein 39-like.	0.579
LOC114427771	LOC114447196	ENSPRNP00000016236	ENSPRNP00000007261	lamin-A-like.	Barrier-to-autointegration factor-like protein.	0.758
LOC114427771	LOC114450717	ENSPRNP00000016236	ENSPRNP00000011359	lamin-A-like.	RNA-binding protein 39-like.	0.579
LOC114427771	ankle2	ENSPRNP00000016236	ENSPRNP00000011978	lamin-A-like.	Ankyrin repeat and LEM domain containing 2.	0.501
LOC114427771	emd	ENSPRNP00000016236	ENSPRNP00000050702	lamin-A-like.	Emerin.	0.842
LOC114427771	lemd3	ENSPRNP00000016236	ENSPRNP00000050112	lamin-A-like.	LEM domain containing 3.	0.760
LOC114427771	lmnb1	ENSPRNP00000016236	ENSPRNP00000044463	lamin-A-like.	Lamin B1.	0.820
LOC114427771	lmnb2	ENSPRNP00000016236	ENSPRNP00000010586	lamin-A-like.	Lamin B2.	0.846
LOC114438730	LOC114427771	ENSPRNP00000012383	ENSPRNP00000016236	RNA-binding protein 39-like.	lamin-A-like.	0.579
LOC114438730	LOC114447196	ENSPRNP00000012383	ENSPRNP00000007261	RNA-binding protein 39-like.	Barrier-to-autointegration factor-like protein.	0.783
LOC114438730	ankle2	ENSPRNP00000012383	ENSPRNP00000011978	RNA-binding protein 39-like.	Ankyrin repeat and LEM domain containing 2.	0.623
LOC114438730	emd	ENSPRNP00000012383	ENSPRNP00000050702	RNA-binding protein 39-like.	Emerin.	0.733
LOC114438730	lmnb1	ENSPRNP00000012383	ENSPRNP00000044463	RNA-binding protein 39-like.	Lamin B1.	0.601
LOC114438730	lmnb2	ENSPRNP00000012383	ENSPRNP00000010586	RNA-binding protein 39-like.	Lamin B2.	0.592
LOC114447196	LOC114427771	ENSPRNP00000007261	ENSPRNP00000016236	Barrier-to-autointegration factor-like protein.	lamin-A-like.	0.758
LOC114447196	LOC114438730	ENSPRNP00000007261	ENSPRNP00000012383	Barrier-to-autointegration factor-like protein.	RNA-binding protein 39-like.	0.783
LOC114447196	LOC114450717	ENSPRNP00000007261	ENSPRNP00000011359	Barrier-to-autointegration factor-like protein.	RNA-binding protein 39-like.	0.783
LOC114447196	ankle2	ENSPRNP00000007261	ENSPRNP00000011978	Barrier-to-autointegration factor-like protein.	Ankyrin repeat and LEM domain containing 2.	0.813
LOC114447196	emd	ENSPRNP00000007261	ENSPRNP00000050702	Barrier-to-autointegration factor-like protein.	Emerin.	0.971
LOC114447196	lemd3	ENSPRNP00000007261	ENSPRNP00000050112	Barrier-to-autointegration factor-like protein.	LEM domain containing 3.	0.847