STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114450688Probable E3 ubiquitin-protein ligase ARI8. (250 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.753
rps27a
Ribosomal protein S27a.
    
 0.750
LOC114437253
Ubiquitin-conjugating enzyme E2 variant 3-like.
   
 0.712
birc6
Baculoviral IAP repeat containing 6.
    
 0.709
ube2l3
Ubiquitin conjugating enzyme E2 L3.
   
 0.671
LOC114443376
Ubiquitin-conjugating enzyme E2 L3-like.
   
 0.671
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.668
arih2
Ariadne RBR E3 ubiquitin protein ligase 2.
    
 0.655
rnf216
Ring finger protein 216.
    
 0.655
rnf31
Ring finger protein 31.
    
 0.655
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.