STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114447330Homeobox protein prophet of Pit-1-like. (233 aa)    
Predicted Functional Partners:
LOC114442208
Serum response factor-like.
    
 0.651
srf
Serum response factor.
    
 0.651
lhx4
LIM homeobox 4.
    
0.623
LHX3
LIM homeobox 3.
    
0.623
pou1f1
POU class 1 homeobox 1.
    
 
 0.619
ctnnb1
Catenin beta 1.
    
 
 0.570
ENSPRNP00000027936
annotation not available
    
  0.565
ENSPRNP00000027937
annotation not available
    
  0.565
tpk1
Thiamin pyrophosphokinase 1.
    
  0.565
en2
Engrailed homeobox 2.
   
0.564
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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