STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114442763Protein NipSnap homolog 3A-like. (258 aa)    
Predicted Functional Partners:
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
   
    0.764
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
   
  0.632
utp15
UTP15 small subunit processome component.
   
    0.608
wdr6
WD repeat domain 6.
   
    0.607
psmd1
Proteasome 26S subunit, non-ATPase 1.
   
    0.607
nop56
NOP56 ribonucleoprotein.
   
    0.600
ripk4
Receptor interacting serine/threonine kinase 4.
    
  0.571
smc1a
Structural maintenance of chromosomes 1A.
   
    0.568
LOC114451717
Structural maintenance of chromosomes protein 1B-like.
   
    0.568
ASF1B
Histone chaperone asf1b-B.
   
    0.567
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.