STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
restRE1 silencing transcription factor. (959 aa)    
Predicted Functional Partners:
LOC114433014
Paired amphipathic helix protein Sin3a-like.
    
 0.952
sin3b
SIN3 transcription regulator family member B.
    
 0.952
sin3a
SIN3 transcription regulator family member A.
    
 0.952
rcor1
REST corepressor 1.
    
 0.940
rcor2
REST corepressor 2.
    
 0.911
rcor3
REST corepressor 3.
    
 0.911
kdm1a
Lysine demethylase 1A.
    
 0.893
ENSPRNP00000010246
Histone deacetylase 8.
    
 0.853
LOC114428135
Probable histone deacetylase 1-B.
    
 0.853
HDAC1
Probable histone deacetylase 1-B.
    
 0.853
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.