STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cps1Carbamoyl-phosphate synthase 1. (1511 aa)    
Predicted Functional Partners:
ASS1
Argininosuccinate synthase 1.
 
 
 0.991
otc
Ornithine carbamoyltransferase.
 
 
 0.988
dhodh
Dihydroorotate dehydrogenase (quinone).
  
 0.978
ppat
Phosphoribosyl pyrophosphate amidotransferase.
  
 
 0.963
dpyd
Dihydropyrimidine dehydrogenase.
  
 0.942
umps
Uridine monophosphate synthetase.
  
 
 0.923
gart
annotation not available
  
 
 0.922
nags
N-acetylglutamate synthase.
  
 
 0.913
LOC114448986
Cytochrome b5 reductase 4.
  
 0.911
asns
Asparagine synthetase (glutamine-hydrolyzing).
    
 0.881
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.