STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114426749Altered inheritance of mitochondria protein 21-like. (772 aa)    
Predicted Functional Partners:
LOC114445672
Uncharacterized LOC114445672.
   
0.994
ENSPRNP00000055731
annotation not available
   
 0.989
pold2
DNA polymerase delta 2, accessory subunit.
    
 0.818
apaf1
Apoptotic peptidase activating factor 1.
   
 0.808
pold1
DNA polymerase delta 1, catalytic subunit.
   
 0.771
arid4a
AT-rich interaction domain 4A.
    
  0.739
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
    
  0.739
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.727
ddx20
DEAD-box helicase 20.
   
 0.708
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.698
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.