STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
svep1Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1. (3533 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
    
 0.892
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
    
 0.892
ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.871
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.862
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.840
ENSPRNP00000000478
annotation not available
    
 0.814
actr8
Actin related protein 8.
    
  0.813
NCSTN
Nicastrin.
    
 0.811
LOC114433499
Gamma-secretase subunit Aph-1b.
    
 0.806
tnn
Tenascin N.
    
 0.801
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.