STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lig3DNA ligase 3. (999 aa)    
Predicted Functional Partners:
xrcc1
X-ray repair cross complementing 1.
   
 0.999
pcna
Proliferating cell nuclear antigen.
   
 0.980
xrcc6
X-ray repair cross complementing 6.
   
 0.977
xrcc5
X-ray repair cross complementing 5.
   
 0.976
xrcc4
X-ray repair cross complementing 4.
    
 0.969
pnkp
Polynucleotide kinase 3'-phosphatase.
   
 0.957
polb
DNA polymerase beta.
  
 0.941
tp53bp1
Tumor protein p53 binding protein 1.
   
 0.913
LOC114450478
Probable flap endonuclease 1 homolog.
  
 0.912
fen1
Flap structure-specific endonuclease 1.
  
 0.912
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.