STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shroom2Shroom family member 2. (1430 aa)    
Predicted Functional Partners:
actr8
Actin related protein 8.
    
 0.816
actr5
Actin related protein 5.
    
 0.746
actl6a
Actin like 6A.
   
 0.746
gtf2h1
General transcription factor IIH subunit 1.
    
 0.729
polrmt
RNA polymerase mitochondrial.
    
 0.728
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.728
gtf2h3
General transcription factor IIH subunit 3.
    
 0.725
LOC114440826
General transcription factor IIH subunit 2-like.
    
 0.712
arid4a
AT-rich interaction domain 4A.
    
  0.703
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
    
  0.703
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.