STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sap30bpSAP30 binding protein. (337 aa)    
Predicted Functional Partners:
LOC114450271
poly(U)-binding-splicing factor PUF60-like.
   
   0.740
PUF60
poly(U) binding splicing factor 60.
   
   0.740
suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 
 0.727
thoc1
THO complex 1.
   
   0.680
arid4a
AT-rich interaction domain 4A.
   
 
  0.663
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
   
 
  0.663
sap18
Sin3A associated protein 18.
   
 
  0.653
sap130
Sin3A associated protein 130.
   
 
  0.651
LOC114438460
Cyclin-dependent kinase 11B-like.
   
   0.650
cdk10
Cyclin dependent kinase 10.
   
   0.650
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.