STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000007899annotation not available (227 aa)    
Predicted Functional Partners:
pold2
DNA polymerase delta 2, accessory subunit.
    
 0.818
apaf1
Apoptotic peptidase activating factor 1.
   
 0.808
sh2d1a
SH2 domain containing 1A.
   
 0.794
LOC114452879
SH2 domain-containing protein 1B-like.
   
 0.777
pold1
DNA polymerase delta 1, catalytic subunit.
   
 0.771
arid4a
AT-rich interaction domain 4A.
    
  0.739
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
    
  0.739
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.727
ddx20
DEAD-box helicase 20.
   
 0.708
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.698
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.