STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114440553Atherin-like. (412 aa)    
Predicted Functional Partners:
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.910
trrap
Transformation/transcription domain associated protein.
   
 0.908
meaf6
MYST/Esa1 associated factor 6.
    
 0.907
actl6a
Actin like 6A.
   
 0.900
LOC114438137
Opioid growth factor receptor-like protein 1.
    
 0.894
ruvbl2
RuvB like AAA ATPase 2.
   
 0.854
vps72
Vacuolar protein sorting 72 homolog.
   
 0.827
ENSPRNP00000023862
annotation not available
   
 0.790
LOC114435725
ruvB-like 1.
   
 0.790
LOC114435986
ruvB-like 1.
   
 0.790
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.