STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114440856Probable palmitoyltransferase ZDHHC12. (270 aa)    
Predicted Functional Partners:
pot1
Protection of telomeres 1.
    
 0.637
LOC114452153
Uncharacterized LOC114452153.
    
 0.632
coq3
Coenzyme Q3, methyltransferase.
     
 0.613
tmem254
Transmembrane protein 254.
     
 0.565
blvrb
Biliverdin reductase B.
     
 0.565
rad50
RAD50 double strand break repair protein.
    
 0.537
ndufa9
NADH:ubiquinone oxidoreductase subunit A9.
     
 0.529
htatip2
HIV-1 Tat interactive protein 2.
     
 0.529
nbn
Nibrin.
    
  0.528
GOLGA7
Golgin subfamily A member 7-like.
    
 0.525
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.